{
  "schemaVersion": 1,
  "slug": "pydeseq2",
  "name": "pydeseq2",
  "description": "Differential gene expression for bulk RNA-seq with PyDESeq2 — formulaic designs, Wald tests, FDR correction, LFC shrinkage, and result visualization.",
  "category": "analysis",
  "version": "1.1.0",
  "author": "K-Dense Inc. (adapted by Heureka Labs)",
  "license": "MIT",
  "attribution": "https://github.com/K-Dense-AI/scientific-agent-skills",
  "tags": [
    "rna-seq",
    "differential-expression",
    "deseq2",
    "statistics"
  ],
  "updatedAt": "2026-08-24T08:30:49+00:00",
  "source": {
    "repo": "heurekalabsco/heurekaskills",
    "commit": "6bc57243f56e10da0507a49e08a5e90d4b3f3cd4",
    "path": "skills/pydeseq2"
  },
  "checksum": "sha256:827033228daf52215d251103017c39da9db8249777ab499de2d273e572a46d28",
  "signals": {
    "installs_total": 1,
    "installs_user": 0,
    "installs_agent": 1,
    "installs_7d": 1,
    "installs_user_7d": 0,
    "installs_30d": 1,
    "trending_rank": 13
  },
  "files": [
    {
      "path": "SKILL.md",
      "url": "https://heurekaskills.com/pydeseq2/files/SKILL.md",
      "size": 20115,
      "sha256": "eaaed6781e4f3c6a77396943f167cb4d80741ff5a6dd87b4966f96a649a98554"
    },
    {
      "path": "references/analysis_patterns.md",
      "url": "https://heurekaskills.com/pydeseq2/files/references/analysis_patterns.md",
      "size": 1715,
      "sha256": "582ad385da6ea607eafcfc8815ae1d38f64010a98d4bf0d0badd39eb29401522"
    },
    {
      "path": "references/api_reference.md",
      "url": "https://heurekaskills.com/pydeseq2/files/references/api_reference.md",
      "size": 9409,
      "sha256": "4a821a8f4d42522b1dddcc1dba0d58de29c00bdeaf10f5989d642fec55d6a126"
    },
    {
      "path": "references/core_workflow_steps.md",
      "url": "https://heurekaskills.com/pydeseq2/files/references/core_workflow_steps.md",
      "size": 5344,
      "sha256": "e1534deb9b94f33cce7b4ef52ef5fb6bd950a43ff25bb2c9be4dcf344d0ff77d"
    },
    {
      "path": "references/workflow_guide.md",
      "url": "https://heurekaskills.com/pydeseq2/files/references/workflow_guide.md",
      "size": 14408,
      "sha256": "0b79be5f1781ba0fbb4986916487a7883b72dbc60aeedd21af97a842e42cf775"
    }
  ]
}