{
  "schemaVersion": 1,
  "slug": "hubmap",
  "name": "hubmap",
  "description": "Query HuBMAP — the NIH atlas of healthy human tissue — for datasets, donors, samples and files across kidney, lung, placenta, spleen, heart, intestine and twenty more organs. Covers CODEX, MIBI, Visium, snRNA-seq and mass-spec assays, the donor to sample to dataset provenance chain, and which assays are openly downloadable versus protected human sequence.",
  "category": "data",
  "version": "1.0.0",
  "author": "Heureka Labs",
  "license": "CC-BY-4.0",
  "tags": [
    "hubmap",
    "public-data",
    "spatial",
    "single-cell",
    "controlled-access"
  ],
  "covers": [
    "human biomolecular atlas program",
    "reference atlas",
    "uterus",
    "small intestine",
    "large intestine",
    "pancreas",
    "ovary",
    "fallopian tube",
    "thymus",
    "lymph node",
    "bone marrow",
    "skin",
    "liver",
    "brain",
    "eye",
    "phenocycler",
    "cell dive",
    "imaging mass cytometry",
    "slide-seq",
    "seqfish",
    "xenium",
    "atac-seq",
    "rna-seq",
    "10x multiome",
    "geomx",
    "maldi",
    "lc-ms",
    "histology",
    "spatial transcriptomics",
    "h5ad"
  ],
  "papers": [
    "PMID:31597973",
    "PMID:37468756",
    "PMID:34750582",
    "PMID:40082611",
    "PMID:40212885"
  ],
  "access": [
    "open",
    "controlled"
  ],
  "platform": "hive-elasticsearch",
  "updatedAt": "2026-08-27T10:20:43-04:00",
  "source": {
    "repo": "heurekalabsco/heurekaskills",
    "commit": "39b38602c74abeb725438a3906d881fcba5f3cd6",
    "path": "skills/hubmap"
  },
  "checksum": "sha256:b44f35dc07bf532b38bf16eaf71d4a8e00a5ded53153993cd20e7ad05bb99ce8",
  "signals": null,
  "files": [
    {
      "path": "SKILL.md",
      "url": "https://heurekaskills.com/hubmap/files/SKILL.md",
      "size": 42284,
      "sha256": "0aaa2cc0d9a274a85d668112ceb2005ec5e79c7cf7874ad98d04cd5608c53411"
    }
  ]
}