{
  "schemaVersion": 1,
  "slug": "geo",
  "name": "geo",
  "description": "Find, triage and download public gene expression datasets from NCBI GEO — search series by tissue, disease, organism, assay and file type through E-utilities, read the esummary triage fields before transferring anything, then pull the counts matrices from all three places GEO keeps them — suppl/, the per-platform series matrix, and the per-sample directories.",
  "category": "data",
  "version": "1.2.0",
  "author": "Heureka Labs",
  "license": "CC-BY-4.0",
  "tags": [
    "geo",
    "rna-seq",
    "transcriptomics",
    "public-data",
    "entrez"
  ],
  "covers": [
    "geo",
    "gse",
    "gsm",
    "gds",
    "gpl",
    "rna-seq",
    "microarray",
    "scRNA-seq",
    "spatial transcriptomics",
    "expression",
    "transcriptomics",
    "counts matrix",
    "series matrix",
    "superseries",
    "multi-platform",
    "soft",
    "aging",
    "senescence",
    "skeletal muscle",
    "liver",
    "brain",
    "heart",
    "kidney",
    "blood",
    "pbmc",
    "lung",
    "cancer",
    "human",
    "mouse",
    "e-utilities"
  ],
  "papers": [
    "PMID:11752295",
    "PMID:23193258",
    "PMID:27008011",
    "PMID:17496320",
    "PMID:36516485",
    "PMID:31862890"
  ],
  "access": [
    "open"
  ],
  "updatedAt": "2026-08-26T11:33:25-04:00",
  "source": {
    "repo": "heurekalabsco/heurekaskills",
    "commit": "6bc57243f56e10da0507a49e08a5e90d4b3f3cd4",
    "path": "skills/geo"
  },
  "checksum": "sha256:ba3ac85f2a778639451793ff063facdd89a1601df1068c0298b70cf9448c0ca9",
  "signals": null,
  "files": [
    {
      "path": "SKILL.md",
      "url": "https://heurekaskills.com/geo/files/SKILL.md",
      "size": 75418,
      "sha256": "41a5e26ad01ee66a9d5d143ad1f80b34f92dfb292069425a7fd474d7c09307f0"
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}