{
  "schemaVersion": 1,
  "slug": "bixbench",
  "name": "bixbench",
  "description": "Access BixBench, a dataset of 205 open-ended bioinformatics questions paired with 59 data capsules taken from published papers' analysis notebooks. Load the index, browse questions by category and source paper, and pull a capsule's real data onto disk. A benchmark by origin, and a browsable corpus of worked analysis cases in its own right.",
  "category": "data",
  "version": "1.2.0",
  "author": "Heureka Labs",
  "license": "CC-BY-4.0",
  "tags": [
    "benchmark",
    "bioinformatics",
    "agents",
    "evaluation"
  ],
  "covers": [
    "bixbench",
    "benchmark",
    "agent evaluation",
    "bioinformatics",
    "rna-seq",
    "genomics",
    "differential expression",
    "whole genome sequencing",
    "phylogenetics",
    "transcriptomics",
    "epigenomics",
    "imaging",
    "jupyter notebook",
    "capsule",
    "futurehouse",
    "analysis cases"
  ],
  "papers": [
    "doi:10.48550/arXiv.2503.00096"
  ],
  "access": [
    "open"
  ],
  "updatedAt": "2026-08-27T20:36:55-04:00",
  "source": {
    "repo": "heurekalabsco/heurekaskills",
    "commit": "ea30eb6195313c2aec3cf9707546e384317d5b0f",
    "path": "skills/bixbench"
  },
  "checksum": "sha256:41b06a84230a911e7ee16b039125e4c867c93a6773145f8dee4bae1e02204fba",
  "signals": null,
  "files": [
    {
      "path": "SKILL.md",
      "url": "https://heurekaskills.com/bixbench/files/SKILL.md",
      "size": 21359,
      "sha256": "c572183c7f54233b7fa61831239ce40bd581aa7c64ed8774e53b865891e8c273"
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}