{
  "schemaVersion": 1,
  "slug": "bixbench",
  "name": "bixbench",
  "description": "Access BixBench, a dataset of 205 open-ended bioinformatics questions paired with 59 data capsules taken from published papers' analysis notebooks. Load the index, browse questions by category and source paper, and pull a capsule's real data onto disk. A benchmark by origin, and a browsable corpus of worked analysis cases in its own right.",
  "category": "data",
  "version": "1.1.0",
  "author": "Heureka Labs",
  "license": "CC-BY-4.0",
  "tags": [
    "benchmark",
    "bioinformatics",
    "agents",
    "evaluation"
  ],
  "covers": [
    "bixbench",
    "benchmark",
    "agent evaluation",
    "bioinformatics",
    "rna-seq",
    "genomics",
    "differential expression",
    "whole genome sequencing",
    "phylogenetics",
    "transcriptomics",
    "epigenomics",
    "imaging",
    "jupyter notebook",
    "capsule",
    "futurehouse",
    "analysis cases"
  ],
  "papers": [
    "doi:10.48550/arXiv.2503.00096"
  ],
  "access": [
    "open"
  ],
  "updatedAt": "2026-08-23T07:03:09-04:00",
  "source": {
    "repo": "heurekalabsco/heurekaskills",
    "commit": "6bc57243f56e10da0507a49e08a5e90d4b3f3cd4",
    "path": "skills/bixbench"
  },
  "checksum": "sha256:97d21abe84589b379756561f360820e8c2bafdfab2ecdc3414233e35a0043a21",
  "signals": null,
  "files": [
    {
      "path": "SKILL.md",
      "url": "https://heurekaskills.com/bixbench/files/SKILL.md",
      "size": 20868,
      "sha256": "7fa7f511970bf1ee54ff7aebc75054b9e20cc61d9b4f73057eb67325b7ff68fd"
    }
  ]
}