{
  "schemaVersion": 1,
  "slug": "biostudies",
  "name": "biostudies",
  "description": "Search and retrieve studies from EBI BioStudies, the archive holding the ArrayExpress collection of functional-genomics submissions whose E-MTAB accessions mostly never reach GEO. Resolve an accession, traverse the nested section tree that carries title, organism and protocols, and download processed files and MAGE-TAB sample tables.",
  "category": "data",
  "version": "1.1.0",
  "author": "Heureka Labs",
  "license": "CC-BY-4.0",
  "tags": [
    "arrayexpress",
    "rna-seq",
    "transcriptomics",
    "public-data",
    "microarray"
  ],
  "covers": [
    "arrayexpress",
    "biostudies",
    "E-MTAB",
    "E-GEOD",
    "E-MEXP",
    "S-BIAD",
    "S-BSST",
    "EMPIAR",
    "rna-seq",
    "scRNA-seq",
    "single cell",
    "microarray",
    "functional genomics",
    "transcriptomics",
    "gene expression",
    "differential expression",
    "MAGE-TAB",
    "SDRF",
    "h5ad",
    "ENA",
    "fastq",
    "EMBL-EBI",
    "bioimages",
    "cryo-EM",
    "heart",
    "lymphatic endothelial cells",
    "human",
    "mouse",
    "cardiac inflammation",
    "EFO"
  ],
  "papers": [
    "PMID:33211879",
    "PMID:42167442",
    "PMID:29069414",
    "PMID:26700850",
    "PMID:30357387",
    "PMID:25361974",
    "PMID:12519949",
    "PMID:17087822"
  ],
  "access": [
    "open"
  ],
  "updatedAt": "2026-08-26T11:33:25-04:00",
  "source": {
    "repo": "heurekalabsco/heurekaskills",
    "commit": "6bc57243f56e10da0507a49e08a5e90d4b3f3cd4",
    "path": "skills/biostudies"
  },
  "checksum": "sha256:e6c16c3ae742c4ad412c00f8b3f660d282013a2c4c47298eba656d77b078b440",
  "signals": null,
  "files": [
    {
      "path": "SKILL.md",
      "url": "https://heurekaskills.com/biostudies/files/SKILL.md",
      "size": 74175,
      "sha256": "eadea152b5e887c735af9f6332d2947b51873ba9c8fee3112ca379a763c9d19a"
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  ]
}