{
  "schemaVersion": 1,
  "slug": "bioagent-bench",
  "name": "bioagent-bench",
  "description": "Access BioAgent Bench, ten end-to-end bioinformatics pipeline tasks where an agent is handed raw inputs and a written objective and must return one deliverable file. Fetch the task index and per-task inputs from an open OSF deposit that needs no account, with the truth files projected out on load. Covers RNA-seq, single-cell, variant calling, metagenomics and comparative genomics.",
  "category": "data",
  "version": "1.0.0",
  "author": "Heureka Labs",
  "license": "CC-BY-4.0",
  "tags": [
    "benchmark",
    "bioinformatics",
    "agents",
    "evaluation",
    "public-data"
  ],
  "covers": [
    "bioagent bench",
    "benchmark",
    "agent evaluation",
    "bioinformatics pipeline",
    "rna-seq",
    "differential expression",
    "deseq2",
    "single-cell",
    "scrna-seq",
    "variant calling",
    "giab",
    "na12878",
    "metagenomics",
    "kraken",
    "viral metagenomics",
    "comparative genomics",
    "phylogenetics",
    "transcript quantification",
    "alzheimer",
    "mouse model",
    "cystic fibrosis",
    "escherichia coli",
    "candida parapsilosis",
    "micrococcus",
    "skeletal muscle",
    "osf",
    "ground truth",
    "contamination",
    "perturbation",
    "robustness"
  ],
  "access": [
    "open"
  ],
  "updatedAt": "2026-08-28T22:39:39-04:00",
  "source": {
    "repo": "heurekalabsco/heurekaskills",
    "commit": "a489ab0a3533363928f0f0f65e2b9df98ec8a933",
    "path": "skills/bioagent-bench"
  },
  "checksum": "sha256:7b8210c0f040807c3928e0cfa7fa3c1ab4aab2089e25cc9f792f86c882d5daa8",
  "signals": null,
  "files": [
    {
      "path": "SKILL.md",
      "url": "https://heurekaskills.com/bioagent-bench/files/SKILL.md",
      "size": 40924,
      "sha256": "387f1da164bf4b4ca9f7fd3c57dc7ea36e8e7ae9ecf61ba7a97eab750ae49b43"
    }
  ]
}